MetaXplore
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MetaXplore Workflow
Load Data
Load cluster table
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Select normalization
None
Rarefy
OTUs Norm
Total sum scaling (TSS)
Centered log-ratio normalization (CLR)
log(X+1)
Square root
Load Taxa file
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Minimum frequency (%)
Load Metadata file
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Load tree file (optional)
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Read Input
OTUs table
Taxonomy table
Metatable
Visualize Input
Alpha diversity parameters
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Change X-axis order
Alpha diversity indice(s)
Observed OTUs
ACE
Chao
Simpson
Shannon
Evenness
PD
Simpson effecive
Shannon effective
P-value cutoff
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Boxplot
Beta diversity parameters
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Distance metric
GUnifrac
Weighted
Unweighted
VAW Unifract
Bray Curtis
Ordination
MDS
NMDS
PCoA
CAP
Number of permutation
99
999
9999
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Beta diversity graph
Pairwise Comparison
Stacked barchart
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Change X-axis order
Taxa Level(s)
Kingdom
Phylum
Class
Order
Family
Genus
Species
Threshold (%)
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Heatmap
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Change X-axis order
Taxa Level(s)
Kingdom
Phylum
Class
Order
Family
Genus
Species
Rotate heatmap
Threshold (%)
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Barchart
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Change X-axis order
Taxa Level(s)
Kingdom
Phylum
Class
Order
Family
Genus
Number of OTUs
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Differential abundance parameters
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Taxa Level
Phylum
Class
Order
Family
Genus
Rb. Threshold (%)
Select Taxon
all
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Differential abundance
Core microbiome parameters
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Detection threshold (%)
Prevalence threshold (%)
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Presence/Absence table
Venn Diagram
Biomarker discovery parameters
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Taxa Level
Phylum
Class
Order
Family
Genus
LDA threshold
Strict (one-against-one)
Relative abundance by sample
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Discriminant taxa